The ATTRIBUTE_DEFINITION table contains records to define each attribute through an associated description syntax.
Fields
A unique identifier for each attribute.
integerTotal: 1
| Table | Field | Name |
|---|---|---|
| cohort_attribute | attribute_definition_id | fpk_ca_attribute_definition |
A complete description of the attribute definition.
clobA short description of the attribute.
stringSyntax to operationalize the attribute definition.
clobType to define what kind of attribute definition the record represents and how the syntax may be executed.
integerInformation about the site of care
Fields
A system-generated unique identifier for each care site. A care site is the place where the provider delivered the healthcare to the person.
integerTotal: 3
| Table | Field | Name |
|---|---|---|
| person | care_site_id | fpk_person_care_site |
| provider | care_site_id | fpk_provider_care_site |
| visit_occurrence | care_site_id | fpk_visit_care_site |
The description of the care site.
stringThe identifier for the care site as it appears in the source data, stored here for reference.
stringRefers to: location / location_id
A foreign key to the geographic location in the location table, where the detailed address information is stored.
integerRefers to: concept / concept_id
A foreign key to the predefined concept identifier in the vocabulary reflecting the place of service.
integerThe source code for the place of service as it appears in the source data, stored here for reference.
stringThe CDM_SOURCE table contains detail about the source database and the process used to transform the data into the OMOP common data model.
Fields
URL or other external reference to location of ETL specification documentation and ETL source code
stringThe name of the organization responsible for the development of the CDM instance
stringThe date when the CDM was instantiated
dateAn abbreviation of the name
stringThe full name of the source.
stringThe version of CDM used
stringA description of the source data origin and purpose for collection. The description may contain a summary of the period of time that is expected to be covered by this dataset.
clobURL or other external reference to location of source documentation
stringThe date for which the source data is most current, such as the last day of data capture
dateThe version of the vocabulary used
stringThe COHORT table contains records derived as a set of subjects that satisfy a given set of inclusion criteria for a duration of time.
Fields
Refers to: cohort_definition / cohort_definition_id
A foreign key to a record in the COHORT_DEFINITION table containing relevant Cohort definition information.
integerThe date when the cohort definition criteria for the person, provider or visit no longer match or the cohort membership was terminated.
dateThe date when the cohort definition criteria for the person, provider or visit first match.
dateA foreign key to the subject in the cohort. These could be referring to records in the Person, Provider, Visit Occurrence table.
integerThe cohort_attribute table contains attributes assoicated with each subject within a cohort, as defined by a given set of inclusion criteria for a duration of time.
Fields
Refers to: attribute_definition / attribute_definition_id
A foreign key to a record in the ATTRIBUTE_DEFINITION table containing relevant attribute definition information.
integerRefers to: cohort_definition / cohort_definition_id
A foreign key to a record in the COHORT_DEFINITION table containing relevant Cohort definition information.
integerThe date when the cohort definition criteria for the person, provider or visit no longer match or the cohort membership was terminated.
dateThe date when the cohort definition criteria for the person, provider or visit first match.
dateA foreign key to the subject in the cohort. These could be referring to records in the PERSON, PROVIDER, or VISIT_OCCURRENCE table.
integerRefers to: concept / concept_id
The attribute result stored as a concept id. This is applicable to attributes where the result is expressed as a categorical value.
integerThe attribute result stored as a number. This is applicable to attributes where the result is expressed as a numeric value, such as calculated entities (e.g. age, BMI) or composite scales (e.g. Charlson index).
numberThe cohort definition table contains records to define each derived cohort through an associated description and syntax.
Fields
A complete description of the cohort definition.
clobA unique identifier for each cohort.
integerTotal: 2
| Table | Field | Name |
|---|---|---|
| cohort | cohort_definition_id | fpk_cohort_definition |
| cohort_attribute | cohort_definition_id | fpk_ca_cohort_definition |
A short description of the cohort.
stringSyntax to operationalize the cohort definition.
clobA date to indicate when the cohort was instantiated in the COHORT table.
dateRefers to: concept / concept_id
Type to define what kind of cohort definition the record represents and how the syntax may be executed.
integerA foreign key to the concept to which defines the domain of subjects that are members of the cohort (e.g., person, provider, visit).
integerThe CONCEPT table contains records that uniquely identify each fundamental unit of meaning used to express clinical information. Concepts are derived from source vocabularies, which represent clinical information across different domains (e.g. conditions, drugs, procedures) through the use of source codes and associated descriptions. Some concepts are designated as standard concepts, meaning these concepts can be used within the OMOP Common Data Model and within standardized analytics. Each standard concept has a primary domain, which defines the location where the concept would be expected to be observed within OMOP Common Data Model.
Fields
Refers to: concept_class / concept_class_id
The category or class of the concept along both the hierarchical tree as well as different domains within a vocabulary. Examples are “Clinical Drug”, “Ingredient”, “Clinical Finding” etc.
stringThe concept code represents the identifier of the concept in the source data it originates from, such as SNOMED-CT concept IDs, RxNorm RXCUIs etc. Note that concept codes are not unique across vocabularies.
stringA unique identifier for each concept across all domains.
integerTotal: 86
An unambiguous, meaningful and descriptive name for the concept.
stringThe domain a concept belongs to.
stringReason the concept was invalidated. Possible values are D (deleted), U (replaced with an update) or NULL when valid_end_date has the default value.
stringThis flag determines where a concept is a Standard Concept, i.e. is used in the data, a class concept, or a non-standard concept. The allowables values for standard_concept are: ’S’ for Standard Concept, ‘C’ for a Class Concept, otherwise the content is null for non-standard concepts, including source concepts. Standard Concepts (S) may appear in CDM tables in CONCEPT_ID fields, whereas Class concepts © should not appear in the CDM data, but participate in the CONCEPT_ANCESTOR and can be used to identify descendants that may appear in the data. Non-standard concepts can only appear in SOURCE_CONCEPT_ID fields and are not used in CONCEPT_ANCESTOR.
stringThe date when the concept became invalid because it was deleted or superseded (updated) by a new concept. The default value is 31-Dec-2099.
dateThe date when the concept was first recorded.
dateRefers to: vocabulary / vocabulary_id
A foreign key to the vocabulary table indicating from which source the concept has been adapted.
stringThe CONCEPT_ANCESTOR table contains records that define the inferred hierarchical relationships between all standard concepts. The concept ancestor table is fully derived from the concept, CONCEPT_RELATIONSHIP, and relationship tables, whereby all ancestor-descendant relationships can be inferred from traversing all parent-child relationships between standard concepts. The concept ancestor table includes records for all parent-child relationships, as well as grandparent-grandchild relationships and additional levels of lineage. The concept ancestor table enables efficient identification of multi-step hierarchical relationships, such as branded drugs that fall within a therapeutic class or specific diagnosis that are classified within a particular system organ class.
Fields
Refers to: concept / concept_id
A foreign key to the concept code in the concept table for the higher-level concept that forms the ancestor in the relationship.
integerRefers to: concept / concept_id
A foreign key to the concept code in the concept table for the lower-level concept that forms the descendant in the relationship.
integerThe maximum separation in number of levels of hierarchy between ancestor and descendant concepts. This is an optional attribute that is used to simplify hierarchic analysis.
integerThe minimum separation in number of levels of hierarchy between ancestor and descendant concepts. This is an optional attribute that is used to simplify hierarchic analysis.
integerThe CONCEPT_CLASS table includes a list of the classifications used to differentiate concepts within a given vocabulary. This reference table is populated with a single record for each concept class and includes a descriptive name for the concept class.
Fields
Refers to: concept / concept_id
A foreign key that refers to a standard concept identifier in the Standardized Vocabularies for the Class the record belongs to.
integerA unique key for each class.
stringTotal: 1
| Table | Field | Name |
|---|---|---|
| concept | concept_class_id | fpk_concept_class |
The name describing the Concept Class, e.g. “Clinical Finding”, “Ingredient”, etc.
stringThe CONCEPT_RELATIONSHIP table contains records that define direct relationships between any two concepts and the nature of the relationship. The type of relationship is defined in the Relationship table, and is generally classified as hierarchical (parent-child) or non-hierarchical (lateral). All relationships are directional, and each concept relationship is represented twice symmetrically within the concept relationship table. ‘Acute myocardial infarction of the anterior wall’and ‘Acute myocardial infarction’have two concept relationships: 1- ‘Acute myocardial infarction of the anterior wall”is a”Acute myocardial infarction’, and 2- ‘Acute myocardial infarction”subsumes”Acute myocardial infarction of the anterior wall’
Fields
Refers to: concept / concept_id
A foreign key to the concept in the concept table associated with the relationship. Relationships are directional, and this field represents the source concept designation.
integerRefers to: concept / concept_id
A foreign key to the concept in the concept table associated with the relationship. Relationships are directional, and this field represents the destination concept designation.
integerReason the relationship was invalidated. Possible values are D (deleted), U (replaced with an update) or NULL when valid_end_date has the default value.
stringRefers to: relationship / relationship_id
The type of relationship as defined in the relationship table.
stringThe date when the relationship became invalid because it was deleted or superseded (updated) by a new relationship. Default value is 31-Dec-2099.
dateThe date when the instance of the relationship is first recorded.
dateThe CONCEPT_SYNONYM table is used to store alternate names and descriptions for a concept. Each synonym is assigned its own unique identifier and contains the text of a description and the identifier of the concept that it represents.
Fields
Refers to: concept / concept_id
A foreign key to the concept in the concept table.
integerThe alternative name for the concept.
stringA foreign key to a concept representing the language.
integerA Condition Era is defined as a span of time when the Person is assumed to have a given condition.
Fields
Refers to: concept / concept_id
A foreign key that refers to a standard condition concept identifier in the vocabulary.
integerThe end date for the condition era constructed from the individual instances of condition occurrences. It is the end date of the final continuously recorded instance of the condition.
dateA system-generated unique identifier for each condition era.
integerThe start date for the condition era constructed from the individual instances of condition occurrences. It is the start date of the very first chronologically recorded instance of the condition.
dateThe number of individual condition occurrences used to construct the condition era.
integerA foreign key identifier to the person who is experiencing the condition during the condition era. The demographic details of that person are stored in the person table.
integerA diagnosis or condition that has been recorded about a person at a certain time
Fields
Refers to: concept / concept_id
A foreign key that refers to a standard condition concept identifier in the vocabulary.
integerThe date when the instance of the condition is considered to have ended.
dateThe date when the instance of the Condition is considered to have ended.
datetimeA system-generated unique identifier for each condition occurrence event.
integerRefers to: concept / concept_id
A foreign key to a condition concept that refers to the code used in the source.
integerThe source code for the condition as it appears in the source data. This code is mapped to a standard condition concept in the vocabulary and the original code is, stored here for reference. Condition source codes are typically ICD-9-CM diagnosis codes from medical claims or discharge status/disposition codes from EHRs.
stringThe date when the instance of the condition is recorded.
dateThe date and time when the instance of the Condition is recorded.
datetimeRefers to: concept / concept_id
A foreign key to the predefined concept in the standard vocabulary reflecting the condition status.
integerThe source code for condition status as it appears in the source data.
stringRefers to: concept / concept_id
A foreign key to the predefined concept identifier in the vocabulary reflecting the source data from which the condition was recorded, the level of standardization, and the type of occurrence. Conditions are defined as primary or secondary diagnoses, problem lists and person statuses.
integerA foreign key identifier to the person who is experiencing the condition. The demographic details of that person are stored in the person table.
integerRefers to: provider / provider_id
A foreign key to the provider in the provider table who was responsible for determining (diagnosing) the condition.
integerThe reason, if available, that the condition was no longer recorded, as indicated in the source data. Valid values include discharged, resolved, etc.
stringRefers to: visit_occurrence / visit_occurrence_id
A foreign key to the visit in the visit table during which the condition was determined (diagnosed).
integerThe COST table captures records containing the cost of any medical entity recorded in one of the DRUG_EXPOSURE, PROCEDURE_OCCURRENCE, VISIT_OCCURRENCE or DEVICE_OCCURRENCE tables.
Fields
The contracted amount agreed between the payer and provider.
integerRefers to: concept / concept_id
The concept representing the domain of the cost event, from which the corresponding table can be inferred that contains the entity for which cost information is recorded.
integerA foreign key identifier to the event (e.g. Measurement, Procedure, Visit, Drug Exposure, etc) record for which cost data are recorded.
integerA unique identifier for each procedure cost record.
integerRefers to: concept / concept_id
A foreign key identifier to a concept in the CONCEPT table for the provenance or the source of the COST data: Calculated from insurance claim information, provider revenue, calculated from cost-to-charge ratio, reported from accounting database, etc.
integerRefers to: concept / concept_id
A concept representing the 3-letter code used to delineate international currencies, such as USD for US Dollar.
integerRefers to: concept / concept_id
A foreign key referring to a Standard Concept ID in the Standardized Vocabularies for DRG codes.
integerThe source code for the 3-digit DRG source code as it appears in the source data, stored here for reference.
integerThe total amount paid by the Person as a share of the expenses.
integerThe amount paid by the payer (insurer). If there is more than one payer, several cost records indicate that fact.
integerThe amount paid by a primary Payer through the coordination of benefits.
integerThe amount paid by the Payer to a pharmacy for dispensing a drug, excluding the amount paid for the drug ingredient. paid_dispensing_fee contributes to the paid_by_payer field if this field is populated with a nonzero value.
integerThe amount paid by the Payer to a pharmacy for the drug, excluding the amount paid for dispensing the drug. paid_ingredient_cost contributes to the paid_by_payer field if this field is populated with a nonzero value.
integerThe amount paid by the person as a joint assumption of risk. Typically, this is a percentage of the expenses defined by the payer plan (policy) after the person’s deductible is exceeded.
integerThe amount paid by the person as a fixed contribution to the expenses. Copay does not contribute to the out_of_pocket expenses.
integerThe amount paid by the person that is counted toward the deductible defined by the payer plan (policy).
integerRefers to: payer_plan_period / payer_plan_period_id
A foreign key to the payer_plan_period table, where the details of the payer, plan and family are stored.
integerRefers to: concept / concept_id
A foreign key referring to a Standard Concept ID in the Standardized Vocabularies for Revenue codes.
integerThe source code for the Revenue code as it appears in the source data, stored here for reference.
stringThe total amount charged by some provider of goods or services (e.g. hospital, physician pharmacy, dme provider) to payers (insurance companies, the patient).
integerThe cost incurred by the provider of goods or services.
integerThe total amount paid for the expenses of the procedure.
integerTime and cause of death of the Person
Fields
Refers to: concept / concept_id
A foreign key referring to a standard concept identifier in the vocabulary for conditions.
integerRefers to: concept / concept_id
A foreign key to the concept that refers to the code used in the source. Note, this variable name is abbreviated to ensure it will be allowable across database platforms.
integerThe source code for the cause of death as it appears in the source data. This code is mapped to a standard concept in the vocabulary and the original code is, stored here for reference.
stringThe date the person deceased. If the precise date including day or month is not known or not allowed, December is used as the default month, and the last day of the month the default day.
dateThe date and time the person was deceased. If the precise date including day or month is not known or not allowed, December is used as the default month, and the last day of the month the default day.
datetimeRefers to: concept / concept_id
A foreign key referring to the predefined concept identifier in the vocabulary reflecting how the death was represented in the source data.
integerA foreign key identifier to the deceased person. The demographic details of that person are stored in the person table.
integerThe device exposure domain captures records about a person�s inferred exposure to a foreign physical object or instrument that which is used for diagnostic or therapeutic purposes through a mechanism beyond chemical action.
Fields
Refers to: concept / concept_id
Only the DI portion of the UDI would be captured as a Concept in the Standardized Vocabularies.
integerThe date the device or supply was removed from use.
dateThe date and time the Device or supply was removed from use.
datetimeA system-generated unique identifier for each device exposure.
integerThe date the device or supply was applied or used.
dateThe date and time the Device or supply was applied or used.
datetimeRefers to: concept / concept_id
A foreign key to a device concept that refers to the code used in the source.
integerThe source code for the device as it appears in the source data. This code is mapped to a standard device concept in the Standardized Vocabularies and the original code is stored here for reference.
stringRefers to: concept / concept_id
Provenance for the data, e.g. procedure device, from registry, etc.
integerA foreign key identifier to the person who is subjected to the procedure. The demographic details of that person are stored in the person table.
integerRefers to: provider / provider_id
A foreign key to the provider in the provider table who was responsible for using the device.
integerThe number of individual devices used for the exposure
integerThe entire UDI or equivalent.
stringRefers to: visit_occurrence / visit_occurrence_id
A foreign key to the visit in the visit table during which the device was used.
integerThe DOMAIN table includes a list of the domains of data elements that are contained within the OMOP common data model. A domain defines the set of allowable concepts for each standardized field. This reference table is populated with a single record for each domain and includes a descriptive name for the Domain.
Fields
Refers to: concept / concept_id
A foreign key that refers to a standard concept identifier in the Standardized Vocabularies for the Domain the Domain record belongs to.
integerA unique key for each domain.
stringTotal: 1
| Table | Field | Name |
|---|---|---|
| concept | domain_id | fpk_concept_domain |
The name describing the Domain, e.g. “Condition”, “Procedure”, “Measurement” etc.
stringA Dose Era is defined as a span of time when the Person is assumed to be exposed to a constant dose of a specific active ingredient.
Fields
The end date for the drug era constructed from the individual instance of drug exposures. It is the end date of the final continuously recorded instance of utilization of a drug.
dateA unique identifier for each drug era.
integerThe start date for the drug era constructed from the individual instances of drug exposures. It is the start date of the very first chronologically recorded instance of utilization of a drug.
dateThe numeric value of the dose
numberRefers to: concept / concept_id
A foreign key that refers to a standard concept identifier in the Standardized Vocabularies for the active ingredient drug concept.
integerA foreign key identifier to the person who is subjected to the drug during the drug era. The demographic details of that person are stored in the person table.
integerRefers to: concept / concept_id
A foreign key that refers to a standard concept identifier in the Standardized Vocabularies for the unit concept.
integerA Drug Era is defined as a span of time when the Person is assumed to be exposed to a particular active ingredient.
Fields
Refers to: concept / concept_id
A foreign key that refers to a standard concept identifier in the vocabulary for the drug concept.
integerThe end date for the drug era constructed from the individual instance of drug exposures. It is the end date of the final continuously recorded instance of utilization of a drug.
dateA system-generated unique identifier for each drug era.
integerThe start date for the drug era constructed from the individual instances of drug exposures. It is the start date of the very first chronologically recorded instance of utilization of a drug.
dateThe number of individual drug exposure occurrences used to construct the drug era.
integerThe number of observed days of gap between drug exposure records which was tolerated in the building of the drug era record.
integerA foreign key identifier to the person who is subjected to the drug during the drug era. The demographic details of that person are stored in the person table.
integerThe drug exposure domain captures any biochemical substance that is introduced in any way to a patient.
Fields
The number of days of supply of the medication as recorded in the original prescription or dispensing record.
integerRefers to: concept / concept_id
A foreign key to a predefined concept in the Standardized Vocabularies reflecting the unit the effective_drug_dose value is expressed.
integerThe information about the dose unit as detailed in the source.
stringRefers to: concept / concept_id
A foreign key that refers to a standard concept identifier in the vocabulary for the drug concept.
integerThe end date for the current instance of drug utilization. It is not available from all sources.
dateThe end date and time for the current instance of Drug utilization. It is not available from all sources.
datetimeA system-generated unique identifier for each drug utilization event.
integerThe start date for the current instance of drug utilization. Valid entries include a start date of a prescription, the date a prescription was filled, or the date on which a drug administration procedure was recorded.
dateThe start date and time for the current instance of Drug utilization. Valid entries include a start date of a prescription, the date a prescription was filled, or the date on which a Drug administration procedure was recorded.
datetimeRefers to: concept / concept_id
A foreign key to a drug concept that refers to the code used in the source.
integerThe source code for the drug as it appears in the source data. This code is mapped to a standard drug concept in the vocabulary and the original code is, stored here for reference.
stringRefers to: concept / concept_id
A foreign key to the predefined concept identifier in the vocabulary reflecting the type of drug exposure recorded. It indicates how the drug exposure was represented in the source data: as medication history, filled prescriptions, etc.
integerNumerical value of drug dose for this drug_exposure record.
numberAn identifier to determine where the product originated
stringA foreign key identifier to the person who is subjected to the drug. The demographic details of that person are stored in the person table.
integerRefers to: provider / provider_id
A foreign key to the provider in the provider table who initiated (prescribed) the drug exposure.
integerThe quantity of drug as recorded in the original prescription or dispensing record.
numberThe number of refills after the initial prescription. The initial prescription is not counted, values start with 0.
integerRefers to: concept / concept_id
A foreign key to a predefined concept in the Standardized Vocabularies reflecting the route of administration.
integerThe information about the route of administration as detailed in the source.
stringThe directions (“signetur”) on the drug prescription as recorded in the original prescription (and printed on the container) or dispensing record.
clobThe reason the medication was stopped, where available. Reasons include regimen completed, changed, removed, etc.
stringRefers to: visit_occurrence / visit_occurrence_id
A foreign key to the visit in the visit table during which the drug exposure initiated.
integerThe DRUG_STRENGTH table contains structured content about the amount or concentration and associated units of a specific ingredient within a particular drug product. The drug strength table is a supplemental file to support standardized analysis of drug utilization using concepts from the RxNorm vocabulary. A clinical drug concept which contains multiple active ingredients will result in one drug strength record for each active ingredient.
Fields
Refers to: concept / concept_id
The unit corresponding to the numeric value of the amount of the active ingredient contained within the product.
integerThe numeric value associated with the amount of active ingredient contained within the product, in situations when the ingredient is contained within a solid formulation.
numberRefers to: concept / concept_id
The denominator unit corresponding to the numeric value of the concentration of the active ingredient contained within the product.
integerThe denominator of the numeric value associated with the concentration of the active ingredient contained within the product, in situations when the ingredient is contained within a non-solid formulation.
numberRefers to: concept / concept_id
A foreign key to the concept in the concept table, representing the identifier for an RxNorm branded drug or clinical drug concept.
integerRefers to: concept / concept_id
A foreign key to the concept in the concept table, representing the identifier for an RxNorm ingredient concept contained within the drug product.
integerReason the concept was invalidated. Possible values are D (deleted), U (replaced with an update) or NULL when valid_end_date has the default value.
stringRefers to: concept / concept_id
The numerator unit corresponding to the numeric value of the concentration of the active ingredient contained within the product.
integerThe numerator of the numeric value associated with the concentration of the active ingredient contained within the product, in situations when the ingredient is contained within a non-solid formulation.
numberThe date when the concept became invalid because it was deleted or superseded (updated) by a new concept. The default value is 31-Dec-2099.
dateThe date when the concept was first recorded. The default value is 1-Jan-1970.
dateThe fact relationship domain contains details of the relationships between facts within one domain or across two domains, and the nature of the relationship.
Fields
Refers to: concept / concept_id
The concept representing the domain of fact one, from which the corresponding table can be inferred.
integerRefers to: concept / concept_id
The concept representing the domain of fact two, from which the corresponding table can be inferred.
integerThe unique identifier in the table corresponding to the domain of fact one.
integerThe unique identifier in the table corresponding to the domain of fact two.
integerRefers to: concept / concept_id
A foreign key to a standard concept identifier of relationship in the Standardized Vocabularies.
integerPhysical addresses of patients, organizations and care sites
Fields
The address field 1, typically used for the street address, as it appears in the source data.
stringThe address field 2, typically used for additional detail such as buildings, suites, floors, as it appears in the source data.
stringThe city field as it appears in the source data.
stringThe county. The county information is necessary because not all zip codes fall into one and the same county.
stringA system-generated unique identifier for each geographic location.
integerTotal: 2
| Table | Field | Name |
|---|---|---|
| care_site | location_id | fpk_care_site_location |
| person | location_id | fpk_person_location |
The verbatim information that is used to uniquely identify the location as it appears in the source data.
stringThe state field as it appears in the source data.
stringThe zip code. For US addresses, valid zip codes can be 3, 5 or 9 digits long, depending on the source data.
stringThe measurement domain captures measurement orders and measurement results. The measurement domain can contain laboratory results and vital signs.
Fields
Refers to: concept / concept_id
A foreign key to the standard measurement concept identifier in the Standardized Vocabularies.
integerThe date of the Measurement.
dateThe date and time of the Measurement.
datetimeA unique identifier for each measurement.
integerRefers to: concept / concept_id
A foreign key to a concept that refers to the code used in the source.
integerThe measurement name as it appears in the source data. This code is mapped to a standard concept in the Standardized Vocabularies and the original code is, stored here for reference.
stringRefers to: concept / concept_id
A foreign key to the predefined concept identifier in the Standardized Vocabularies reflecting the type of data on which the measurement record is based.
integerRefers to: concept / concept_id
A foreign key identifier to the mathematical operator that is applied to the value_as_number. Operators are <, ≤, =, ≥, >
integerA foreign key identifier to the person about whom the measurement was recorded. The demographic details of that person are stored in the person table.
integerRefers to: provider / provider_id
A foreign key to the provider in the provider table who was responsible for making the measurement.
integerThe upper limit of the normal range of the measurement. The lower range is assumed to be in the same units of measure as the measurement value.
numberThe lower limit of the normal range of the measurement. The lower range is assumed to be in the same units of measure as the measurement value.
numberRefers to: concept / concept_id
A foreign key to a standard concept identifier of measurement units in the Standardized Vocabularies.
integerThe source code for the unit as it appears in the source data. This code is mapped to a standard unit concept in the Standardized Vocabularies and the original code is, stored here for reference.
stringRefers to: concept / concept_id
A foreign key to a measurement stored as a concept identifier. This is applicable to measurements where the result can be expressed as a standard concept from the Standardized Vocabularies (e.g., positive/negative, present/absent, low/high, etc.).
integerA measurement stored as a number. This is applicable to measurement where the result is expressed as a numeric value.
numberThe source value associated with the structured value stored as numeric or concept. This field can be used in instances where the source data are transformed to produce the structured value.
stringRefers to: visit_occurrence / visit_occurrence_id
A foreign key to the visit in the visit table during which the measurement was recorded.
integerThe NOTE table captures unstructured information that was recorded by a provider or a patient in free text notes on a given date.
Fields
Refers to: concept / concept_id
A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the note character encoding type.
integerRefers to: concept / concept_id
A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the language of the note.
integerRefers to: concept / concept_id
A foreign key to the predefined Concept in the Standardized Vocabularies reflecting the HL7 LOINC Document Type Vocabulary classification of the note.
integerThe date the note was recorded.
dateThe time the note was recorded.
datetimeA unique identifier for each note.
integerThe content of the note.
clobThe title of the Note as it appears in the source.
stringRefers to: concept / concept_id
A foreign key to the predefined concept identifier in the Standardized Vocabularies reflecting the type data from which the note.
integerA foreign key identifier to the person about whom the note was recorded. The demographic details of that person are stored in the person table.
integerRefers to: provider / provider_id
A foreign key to the provider in the provider table who was responsible for taking the note.
integerRefers to: visit_occurrence / visit_occurrence_id
Foreign key to visit
integerObservations are clinical facts, such as laboratory tests, signs/symptoms, which are not captured within other CDM tables
Fields
Refers to: concept / concept_id
A foreign key to the standard observation concept identifier in the vocabulary.
integerThe date of the observation.
dateThe time of the observation.
datetimeA system-generated unique identifier for each observation.
integerRefers to: concept / concept_id
A foreign key to a concept that refers to the code used in the source.
integerThe observation code as it appears in the source data. This code is mapped to a standard concept in the vocabulary and the original code is, stored here for reference.
stringRefers to: concept / concept_id
A foreign key to the predefined concept identifier in the vocabulary reflecting the type of the observation.
integerA foreign key identifier to the person about whom the observation was recorded. The demographic details of that person are stored in the person table.
integerRefers to: provider / provider_id
A foreign key to the provider in the provider table who was responsible for making the observation.
integerRefers to: concept / concept_id
A foreign key to a standard concept identifier for a qualifier (e.g., severity of drug-drug interaction alert)
integerThe source value associated with a qualifier to characterize the observation
stringRefers to: concept / concept_id
A foreign key to a standard concept identifier of measurement units in the vocabulary.
integerThe source code for the unit as it appears in the source data. This code is mapped to a standard unit concept in the vocabulary and the original code is, stored here for reference.
stringRefers to: concept / concept_id
A foreign key to an observation result stored as a concept identifier. This is applicable to observations where the result can be expressed as a standard concept from the vocabulary (e.g., positive/negative, present/absent, low/high, etc.).
integerThe observation result stored as a number. This is applicable to observations where the result is expressed as a numeric value.
numberThe observation result stored as a varchar. This is applicable to observations where the result is expressed as verbatim text, such as in radiology or pathology reports.
stringRefers to: visit_occurrence / visit_occurrence_id
A foreign key to the visit in the visit table during which the observation was recorded.
integerTime intervals during which health care information, such as drugs, conditions, and other clinical observations, may be available
Fields
The end date of the observation period for which data are available from the data source.
dateA system-generated unique identifier for each observation period.
integerThe start date of the observation period for which data are available from the data source.
dateRefers to: concept / concept_id
A foreign key identifier to the predefined concept in the Standardized Vocabularies reflecting the source of the observation period information
integerA foreign key identifier to the person for whom the observation period is defined. The demographic details of that person are stored in the person table.
integerThe PAYER_PLAN_PERIOD table captures records that detail the period of time that a person is continuously enrolled under a specific health plan benefit structure from a given payer.
Fields
The source code for the person’s family as it appears in the source data.
stringThe end date of the payer plan period.
dateAn identifier for each unique combination of payer, plan, family code and time span.
integerTotal: 1
| Table | Field | Name |
|---|---|---|
| cost | payer_plan_period_id | fpk_visit_cost_period |
The start date of the payer plan period.
dateThe source code for the payer as it appears in the source data.
stringA foreign key identifier to the person covered by the payer. The demographic details of that person are stored in the person table.
integerThe source code for the person’s coverage plan as it appears in the source data.
stringDemographic information about a Person
Fields
The time of birth at the birth day
datetimeRefers to: care_site / care_site_id
A foreign key to the primary care site in the care site table, where the details of the care site are stored.
integerThe day of the month of birth of the person. For data sources that provide the precise date of birth, the day is extracted and stored in this field.
integerRefers to: concept / concept_id
A foreign key that refers to the standard concept identifier in the vocabulary for the ethnicity of the person.
integerRefers to: concept / concept_id
A foreign key to the ethnicity concept that refers to the code used in the source.
integerThe source code for the ethnicity of the person as it appears in the source data. The person ethnicity is mapped to a standard ethnicity concept in the vocabulary and the original code is, stored here for reference.
stringRefers to: concept / concept_id
A foreign key that refers to a standard concept identifier in the vocabulary for the gender of the person.
integerRefers to: concept / concept_id
A foreign key to the gender concept that refers to the code used in the source.
integerThe source code for the gender of the person as it appears in the source data. The person gender is mapped to a standard gender concept in the vocabulary and the corresponding concept identifier is, stored here for reference.
stringRefers to: location / location_id
A foreign key to the place of residency for the person in the location table, where the detailed address information is stored.
integerThe month of birth of the person. For data sources that provide the precise date of birth, the month is extracted and stored in this field.
integerA system-generated unique identifier for each person.
integerTotal: 15
| Table | Field | Name |
|---|---|---|
| condition_era | person_id | fpk_condition_era_person |
| condition_occurrence | person_id | fpk_condition_person |
| death | person_id | fpk_death_person |
| device_exposure | person_id | fpk_device_person |
| dose_era | person_id | fpk_dose_era_person |
| drug_era | person_id | fpk_drug_era_person |
| drug_exposure | person_id | fpk_drug_person |
| measurement | person_id | fpk_measurement_person |
| note | person_id | fpk_note_person |
| observation | person_id | fpk_observation_person |
| observation_period | person_id | fpk_observation_period_person |
| payer_plan_period | person_id | fpk_payer_plan_period |
| procedure_occurrence | person_id | fpk_procedure_person |
| specimen | person_id | fpk_specimen_person |
| visit_occurrence | person_id | fpk_visit_person |
An encrypted key derived from the person identifier in the source data. This is necessary when a drug safety issue requires a link back to the person data at the source dataset. No value with any medical or demographic significance must be stored.
stringRefers to: provider / provider_id
A foreign key to the primary care provider the person is seeing in the provider table.
integerRefers to: concept / concept_id
A foreign key that refers to a standard concept identifier in the vocabulary for the race of the person.
integerRefers to: concept / concept_id
A foreign key to the race concept that refers to the code used in the source.
integerThe source code for the race of the person as it appears in the source data. The person race is mapped to a standard race concept in the vocabulary and the original code is, stored here for reference.
stringThe year of birth of the person. For data sources with date of birth, the year is extracted. For data sources where the year of birth is not available, the approximate year of birth is derived based on any age group categorization available.
integerProcedures carried out on the Person
Fields
Refers to: concept / concept_id
A foreign key to a standard concept identifier for a modifier to the procedure (e.g. bilateral)
integerA foreign key identifier to the person who is subjected to the procedure. The demographic details of that person are stored in the person table.
integerRefers to: concept / concept_id
A foreign key that refers to a standard procedure concept identifier in the vocabulary.
integerThe date on which the procedure was performed.
dateThe date and time on which the Procedure was performed.
datetimeA system-generated unique identifier for each procedure occurrence.
integerRefers to: concept / concept_id
A foreign key to a procedure concept that refers to the code used in the source.
integerThe source code for the procedure as it appears in the source data. This code is mapped to a standard procedure concept in the vocabulary and the original code is, stored here for reference. Procedure source codes are typically ICD-9-Proc, CPT-4 or HCPCS codes.
stringRefers to: concept / concept_id
The date on which the procedure was performed.
integerRefers to: provider / provider_id
A foreign key to the provider in the provider table who was responsible for carrying out the procedure.
integerThe source code for the qualifier as it appears in the source data.
stringThe quantity of procedures ordered or administered.
integerRefers to: visit_occurrence / visit_occurrence_id
A foreign key to the visit in the visit table during which the procedure was carried out.
integerInformation about health care providers
Fields
Refers to: care_site / care_site_id
A foreign key to the main care site where the provider is practicing.
integerThe Drug Enforcement Administration (DEA) number of the provider.
stringRefers to: concept / concept_id
integerRefers to: concept / concept_id
A foreign key to a concept that refers to the code used in the source.
integerstringThe National Provider Identifier (NPI) of the provider.
stringA system-generated unique identifier for each provider.
integerTotal: 9
| Table | Field | Name |
|---|---|---|
| condition_occurrence | provider_id | fpk_condition_provider |
| device_exposure | provider_id | fpk_device_provider |
| drug_exposure | provider_id | fpk_drug_provider |
| measurement | provider_id | fpk_measurement_provider |
| note | provider_id | fpk_note_provider |
| observation | provider_id | fpk_observation_provider |
| person | provider_id | fpk_person_provider |
| procedure_occurrence | provider_id | fpk_procedure_provider |
| visit_occurrence | provider_id | fpk_visit_provider |
A description of the provider
stringThe identifier used for the provider in the source data, stored here for reference.
stringRefers to: concept / concept_id
A foreign key to a standard provider’s specialty concept identifier in the vocabulary.
integerRefers to: concept / concept_id
A foreign key to a concept that refers to the code used in the source.
integerThe source code for the provider specialty as it appears in the source data, stored here for reference.
stringintegerThe RELATIONSHIP table provides a reference list of all allowable types of relationships that can be used to associate any two concepts in the concept relationship table. Relationships are classified as hierarchical (parent-child) or non-hierarchical, and are used to determine which concept relationship records should be included in the computation of the concept ancestor table.
Fields
Defines whether a hierarchical relationship contributes to the concept_ancestor table. These are subsets of the hierarchical relationships. Valid values are 1 or 0.
stringDefines whether a relationship defines concepts into classes or hierarchies. Values are 1 for hierarchical relationship or 0 if not.
stringRefers to: concept / concept_id
A foreign key that refers to a standard concept identifier in the Standardized Vocabularies for the relationship concept.
integerThe type of relationship captured by the relationship record.
stringTotal: 2
| Table | Field | Name |
|---|---|---|
| concept_relationship | relationship_id | fpk_concept_relationship_id |
| relationship | reverse_relationship_id | fpk_relationship_reverse |
The text that describes the relationship type.
stringRefers to: relationship / relationship_id
The identifier for the relationship used to define the reverse relationship between two concepts.
stringThe SOURCE_TO_CONCEPT_MAP table is a legacy data structure within the OMOP Common Data Model, recommended for use in extract, transform, and load (ETL) processes to maintain local source codes which are not available as concepts in the Standardized Vocabularies, and to establish mappings for each source code into a standard concept that can be used to populate the Common Data Model tables. The source to concept map table is no longer populated with content within the Standardized Vocabularies published to the OMOP community.
Fields
Reason the mapping instance was invalidated. Possible values are D (deleted), U (replaced with an update) or NULL when valid_end_date has the default value.
stringThe source code being translated into a standard concept.
stringAn optional description for the source code. This is included as a convenience to compare the description of the source code to the name of the concept.
stringA foreign key to the source concept to which the source code is being mapped.
integerRefers to: vocabulary / vocabulary_id
A foreign key to the vocabulary table defining the vocabulary of the source code that is being mapped to the standard vocabulary.
stringRefers to: concept / concept_id
A foreign key to the concept to which the source code is being mapped.
integerRefers to: vocabulary / vocabulary_id
A foreign key to the vocabulary table defining the vocabulary of the target concept.
stringThe date when the mapping instance became invalid because it was deleted or superseded (updated) by a new relationship. Default value is 31-Dec-2099.
dateThe date when the mapping instance was first recorded.
dateThe specimen domain contains the records identifying each biological sample from a person.
Fields
Refers to: concept / concept_id
A foreign key to a standard concept identifier for the anatomic location of specimen collection.
integerThe information about the anatomic site as detailed in the source.
stringRefers to: concept / concept_id
A foreign key to a standard concept identifier for the disease status of specimen collection.
integerThe information about the disease status as detailed in the source.
stringA foreign key identifier to the person for whom the specimen is recorded.
integerThe amount of specimen collection from the person during the sampling procedure
numberRefers to: concept / concept_id
A foreign key referring to a standard concept identifier in the Standardized Vocabularies for the specimen.
integerThe date the specimen was obtained from the person.
dateThe time on the date when the specimen was obtained from the person.
datetimeA unique identifier for each specimen.
integerThe specimen identifier as it appears in the source data.
stringThe specimen value as it appears in the source data. This value is mapped to a standard concept in the Standardized Vocabularies and the original code is, stored here for reference.
stringRefers to: concept / concept_id
A foreign key referring to the predefined concept identifier in the Standardized Vocabularies reflecting the system of record from which the specimen was represented in the source data.
integerRefers to: concept / concept_id
A foreign key to a standard concept identifier for the unit associated with the numeric quantity of the specimen collection.
integerThe information about the unit as detailed in the source.
stringVisits for health care services of the Person
Fields
Refers to: concept / concept_id
A foreign key to the predefined concept in the Place of Service Vocabulary reflecting the admitting source for a visit.
integerRefers to: care_site / care_site_id
A foreign key to the care site in the care site table that was visited.
integerRefers to: concept / concept_id
A foreign key to the predefined concept in the Place of Service Vocabulary reflecting the discharge disposition (destination) for a visit.
integerA foreign key identifier to the person for whom the visit is recorded. The demographic details of that person are stored in the person table.
integerRefers to: visit_occurrence / visit_occurrence_id
A foreign key to the VISIT_OCCURRENCE table record of the visit immediately preceding this visit. omop,v5.1,visit_occurrence,admitting_source_value,No,,,,The source code for the admitting source as it appears in the source data. omop,v5.1,visit_occurrence,discharge_to_source_value,No,,,,The source code for the discharge disposition as it appears in the source data.
integerRefers to: provider / provider_id
A foreign key to the provider in the provider table who was associated with the visit.
integerRefers to: concept / concept_id
A foreign key that refers to a visit concept identifier in the Standardized Vocabularies.
integerThe end date of the visit. If this is a one-day visit the end date should match the start date.
dateThe time the visit ended.
datetimeA system-generated unique identifier for each person’s visit or encounter at a healthcare provider.
integerTotal: 8
| Table | Field | Name |
|---|---|---|
| condition_occurrence | visit_occurrence_id | fpk_condition_visit |
| device_exposure | visit_occurrence_id | fpk_device_visit |
| drug_exposure | visit_occurrence_id | fpk_drug_visit |
| measurement | visit_occurrence_id | fpk_measurement_visit |
| note | visit_occurrence_id | fpk_note_visit |
| observation | visit_occurrence_id | fpk_observation_visit |
| procedure_occurrence | visit_occurrence_id | fpk_procedure_visit |
| visit_occurrence | preceding_visit_occurrence_id | fpk_visit_preceding_visit |
Refers to: concept / concept_id
A foreign key to a concept that refers to the code used in the source.
integerThe source code used to reflect the type or source of the visit in the source data.
stringThe start date of the visit.
dateThe time the visit started.
datetimeRefers to: concept / concept_id
A foreign key to the predefined concept identifier in the Standardized Vocabularies reflecting the type of source data from which the visit record is derived.
integerThe VOCABULARY table includes a list of the vocabularies collected from various sources or created de novo by the OMOP community. This reference table is populated with a single record for each vocabulary source and includes a descriptive name and other associated attributes for the vocabulary.
Fields
Refers to: concept / concept_id
A foreign key that refers to a standard concept identifier in the Standardized Vocabularies for the vocabulary the Vocabulary record belongs to.
integerA unique identifier for each vocabulary.
stringTotal: 3
| Table | Field | Name |
|---|---|---|
| concept | vocabulary_id | fpk_concept_vocabulary |
| source_to_concept_map | source_vocabulary_id | fpk_source_to_concept_map_v_1 |
| source_to_concept_map | target_vocabulary_id | fpk_source_to_concept_map_v_2 |
The name describing the vocabulary, for example “SNOMED-CT”, “ICD-9”, “Visit”, etc.
stringThe name describing the vocabulary, for example “SNOMED-CT”, “ICD-9”, “Visit”, etc.
stringExternal reference to documentation or available download of the about the vocabulary.
string